J3_5VPO_025

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5VPO|1|RA|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPO_025 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1258

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5VPO|1|RA|C|2517
5VPO|1|RA|A|2518
5VPO|1|RA|U|2519
5VPO|1|RA|C|2520
*
5VPO|1|RA|G|2545
5VPO|1|RA|U|2546
5VPO|1|RA|U|2547
*
5VPO|1|RA|A|2561
5VPO|1|RA|U|2562
5VPO|1|RA|U|2563
5VPO|1|RA|A|2564
5VPO|1|RA|A|2565
5VPO|1|RA|A|2566
5VPO|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14