J3_5VPO_035

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPO_035 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1908

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5VPO|1|XA|C|990
5VPO|1|XA|U|991
5VPO|1|XA|U|992
5VPO|1|XA|G|993
*
5VPO|1|XA|C|1045
5VPO|1|XA|A|1046
5VPO|1|XA|G|1047
*
5VPO|1|XA|C|1210
5VPO|1|XA|U|1211
5VPO|1|XA|U|1212
5VPO|1|XA|A|1213
5VPO|1|XA|C|1214
5VPO|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z