J3_5VPO_047

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPO_047 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0489

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5VPO|1|YA|C|1298
5VPO|1|YA|G|1299
5VPO|1|YA|U|1300
5VPO|1|YA|A|1301
5VPO|1|YA|A|1302
5VPO|1|YA|G|1303
*
5VPO|1|YA|C|1625
5VPO|1|YA|G|1626
5VPO|1|YA|G|1627
*
5VPO|1|YA|U|1639
5VPO|1|YA|C|1640
5VPO|1|YA|A|1641
5VPO|1|YA|G|1642

Current chains

Chain YA

23S rRNA

Nearby chains