J3_5VPO_072
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5VPO|1|YA|U|271|||C
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPO_072 not in the Motif Atlas
- Homologous match to J3_9DFE_005
- Geometric discrepancy: 0.1505
- The information below is about J3_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5VPO|1|YA|U|269
5VPO|1|YA|A|270
5VPO|1|YA|A|270|||A
5VPO|1|YA|A|270|||B
5VPO|1|YA|C|270|||C
*
5VPO|1|YA|G|270|||W
5VPO|1|YA|G|270|||X
5VPO|1|YA|G|270|||Y
5VPO|1|YA|U|270|||Z
5VPO|1|YA|C|271|||A
5VPO|1|YA|G|271|||B
5VPO|1|YA|U|271|||C
5VPO|1|YA|G|271
*
5VPO|1|YA|C|366
5VPO|1|YA|G|370
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain YI
- 50S ribosomal protein L9
Coloring options: