J3_5VPO_073
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 5VPO|1|YA|G|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPO_073 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.0603
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5VPO|1|YA|C|297
5VPO|1|YA|G|298
5VPO|1|YA|A|299
5VPO|1|YA|A|300
5VPO|1|YA|G|301
*
5VPO|1|YA|C|316
5VPO|1|YA|G|317
5VPO|1|YA|C|318
5VPO|1|YA|C|319
5VPO|1|YA|A|320
5VPO|1|YA|G|321
5VPO|1|YA|A|322
5VPO|1|YA|G|323
5VPO|1|YA|A|324
5VPO|1|YA|G|325
*
5VPO|1|YA|C|337
5VPO|1|YA|G|338
5VPO|1|YA|U|339
5VPO|1|YA|A|340
5VPO|1|YA|G|341
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YF
- 50S ribosomal protein L4
- Chain YY
- 50S ribosomal protein L24
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