J3_5VPO_075
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPO_075 not in the Motif Atlas
- Homologous match to J3_9DFE_013
- Geometric discrepancy: 0.0777
- The information below is about J3_9DFE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5VPO|1|YA|G|1424
5VPO|1|YA|G|1425
5VPO|1|YA|G|1426
5VPO|1|YA|A|1427
5VPO|1|YA|C|1428
5VPO|1|YA|G|1429
*
5VPO|1|YA|C|1564
5VPO|1|YA|C|1565
*
5VPO|1|YA|G|1568
5VPO|1|YA|A|1569
5VPO|1|YA|A|1570
5VPO|1|YA|A|1571
5VPO|1|YA|A|1572
5VPO|1|YA|G|1573
5VPO|1|YA|C|1574
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YD
- 50S ribosomal protein L2
Coloring options: