3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
5VPP|1|RA|A|1384
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5VPP_021 not in the Motif Atlas
Homologous match to J3_7RQB_009
Geometric discrepancy: 0.1834
The information below is about J3_7RQB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04858.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

5VPP|1|RA|G|1344
5VPP|1|RA|C|1345
5VPP|1|RA|G|1346
5VPP|1|RA|G|1347
5VPP|1|RA|G|1348
5VPP|1|RA|A|1349
5VPP|1|RA|C|1350
*
5VPP|1|RA|G|1381
5VPP|1|RA|G|1382
5VPP|1|RA|C|1383
5VPP|1|RA|A|1384
5VPP|1|RA|G|1385
*
5VPP|1|RA|C|1402
5VPP|1|RA|C|1403

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RX
50S ribosomal protein L23

Coloring options:


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