J3_5VPP_022
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPP_022 not in the Motif Atlas
- Homologous match to J3_7RQB_010
- Geometric discrepancy: 0.1783
- The information below is about J3_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.3
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
5VPP|1|RA|U|2091
5VPP|1|RA|U|2092
5VPP|1|RA|G|2093
*
5VPP|1|RA|C|2196
5VPP|1|RA|U|2197
5VPP|1|RA|A|2198
5VPP|1|RA|A|2199
5VPP|1|RA|C|2205
*
5VPP|1|RA|G|2219
5VPP|1|RA|G|2224
5VPP|1|RA|A|2225
5VPP|1|RA|C|2226
5VPP|1|RA|A|2227
5VPP|1|RA|G|2228
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R1
- 50S ribosomal protein L28
- Chain RD
- 50S ribosomal protein L2
- Chain RI
- 50S ribosomal protein L9
Coloring options: