3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5VPP_022 not in the Motif Atlas
Homologous match to J3_7RQB_010
Geometric discrepancy: 0.1783
The information below is about J3_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.3
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

5VPP|1|RA|U|2091
5VPP|1|RA|U|2092
5VPP|1|RA|G|2093
*
5VPP|1|RA|C|2196
5VPP|1|RA|U|2197
5VPP|1|RA|A|2198
5VPP|1|RA|A|2199
5VPP|1|RA|C|2205
*
5VPP|1|RA|G|2219
5VPP|1|RA|G|2224
5VPP|1|RA|A|2225
5VPP|1|RA|C|2226
5VPP|1|RA|A|2227
5VPP|1|RA|G|2228

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R1
50S ribosomal protein L28
Chain RD
50S ribosomal protein L2
Chain RI
50S ribosomal protein L9

Coloring options:


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