J3_5VPP_037

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_037 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1867

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5VPP|1|XA|U|1073
5VPP|1|XA|G|1074
*
5VPP|1|XA|U|1083
5VPP|1|XA|G|1084
5VPP|1|XA|U|1085
5VPP|1|XA|U|1086
5VPP|1|XA|G|1087
*
5VPP|1|XA|C|1098
5VPP|1|XA|G|1099
5VPP|1|XA|C|1100
5VPP|1|XA|A|1101
5VPP|1|XA|A|1102

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XE

30S ribosomal protein S5

Chain XX

messenger RNA