J3_5VPP_039

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5VPP|1|XA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_039 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2721

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5VPP|1|XA|C|1237
5VPP|1|XA|A|1238
5VPP|1|XA|A|1239
5VPP|1|XA|U|1240
5VPP|1|XA|G|1241
*
5VPP|1|XA|C|1296
5VPP|1|XA|C|1297
5VPP|1|XA|C|1298
5VPP|1|XA|A|1299
5VPP|1|XA|G|1300
5VPP|1|XA|U|1301
5VPP|1|XA|U|1302
5VPP|1|XA|C|1303
*
5VPP|1|XA|G|1334
5VPP|1|XA|C|1335
5VPP|1|XA|C|1336
5VPP|1|XA|G|1337

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XM

30S ribosomal protein S13