J3_5VPP_046

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_046 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1366

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5VPP|1|YA|C|1298
5VPP|1|YA|G|1299
5VPP|1|YA|U|1300
5VPP|1|YA|A|1301
5VPP|1|YA|A|1302
5VPP|1|YA|G|1303
*
5VPP|1|YA|C|1625
5VPP|1|YA|G|1626
5VPP|1|YA|G|1627
*
5VPP|1|YA|U|1639
5VPP|1|YA|C|1640
5VPP|1|YA|A|1641
5VPP|1|YA|G|1642

Current chains

Chain YA

23S rRNA

Nearby chains