J3_5VPP_065

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_065 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1007

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5VPP|1|RA|G|1424
5VPP|1|RA|G|1425
5VPP|1|RA|G|1426
5VPP|1|RA|A|1427
5VPP|1|RA|C|1428
5VPP|1|RA|G|1429
*
5VPP|1|RA|C|1564
5VPP|1|RA|C|1565
*
5VPP|1|RA|G|1568
5VPP|1|RA|A|1569
5VPP|1|RA|A|1570
5VPP|1|RA|A|1571
5VPP|1|RA|A|1572
5VPP|1|RA|G|1573
5VPP|1|RA|C|1574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2