J3_5VPP_071

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_071 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1863

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5VPP|1|XA|C|936
5VPP|1|XA|A|937
5VPP|1|XA|A|938
5VPP|1|XA|G|939
*
5VPP|1|XA|C|1344
5VPP|1|XA|U|1345
5VPP|1|XA|A|1346
5VPP|1|XA|G|1347
5VPP|1|XA|U|1348
5VPP|1|XA|A|1349
5VPP|1|XA|A|1350
*
5VPP|1|XA|U|1372
5VPP|1|XA|G|1373
5VPP|1|XA|A|1374
5VPP|1|XA|A|1375
5VPP|1|XA|U|1376
5VPP|1|XA|A|1377
5VPP|1|XA|C|1378
5VPP|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9