3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
5VPP|1|YA|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5VPP_080 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0926
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

5VPP|1|YA|C|297
5VPP|1|YA|G|298
5VPP|1|YA|A|299
5VPP|1|YA|A|300
5VPP|1|YA|G|301
*
5VPP|1|YA|C|316
5VPP|1|YA|G|317
5VPP|1|YA|C|318
5VPP|1|YA|C|319
5VPP|1|YA|A|320
5VPP|1|YA|G|321
5VPP|1|YA|A|322
5VPP|1|YA|G|323
5VPP|1|YA|A|324
5VPP|1|YA|G|325
*
5VPP|1|YA|C|337
5VPP|1|YA|G|338
5VPP|1|YA|U|339
5VPP|1|YA|A|340
5VPP|1|YA|G|341

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YY
50S ribosomal protein L24

Coloring options:


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