J3_5VYC_009

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

AG*CGCAAAUUA*UAGU

Length

15 nucleotides

Bulged bases

5VYC|1|i2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i2|A|40
5VYC|1|i2|G|41
*
5VYC|1|i2|C|481
5VYC|1|i2|G|482
5VYC|1|i2|C|483
5VYC|1|i2|A|484
5VYC|1|i2|A|485
5VYC|1|i2|A|486
5VYC|1|i2|U|487
5VYC|1|i2|U|488
5VYC|1|i2|A|489
*
5VYC|1|i2|U|511
5VYC|1|i2|A|512
5VYC|1|i2|G|513
5VYC|1|i2|U|514

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4, X isoform

Chain J2

40S ribosomal protein S9

Chain X2

40S ribosomal protein S23

Chain Y2

40S ribosomal protein S24