J3_5VYC_012
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CUG*UUCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 5VYC|1|i2|C|1138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VYC|1|i2|C|1094
5VYC|1|i2|U|1095
5VYC|1|i2|G|1096
*
5VYC|1|i2|U|1136
5VYC|1|i2|U|1137
5VYC|1|i2|C|1138
5VYC|1|i2|C|1139
5VYC|1|i2|G|1140
*
5VYC|1|i2|C|1147
5VYC|1|i2|A|1148
5VYC|1|i2|A|1149
5VYC|1|i2|A|1150
5VYC|1|i2|G|1151
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain A2
- 40S ribosomal protein SA
- Chain N2
- 40S ribosomal protein S13
- Chain V2
- 40S ribosomal protein S21
- Chain W2
- 40S ribosomal protein S15a
- Chain a2
- 40S ribosomal protein S26
- Chain b2
- 40S ribosomal protein S27
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