J3_5VYC_029

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUGGAG*CUAC*GGAAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i4|G|1224
5VYC|1|i4|U|1225
5VYC|1|i4|G|1226
5VYC|1|i4|G|1227
5VYC|1|i4|A|1228
5VYC|1|i4|G|1229
*
5VYC|1|i4|C|1529
5VYC|1|i4|U|1530
5VYC|1|i4|A|1531
5VYC|1|i4|C|1532
*
5VYC|1|i4|G|1638
5VYC|1|i4|G|1639
5VYC|1|i4|A|1640
5VYC|1|i4|A|1641
5VYC|1|i4|U|1642

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain F4

40S ribosomal protein S5

Chain I5

40S ribosomal protein S8

Chain Q4

40S ribosomal protein S16

Chain S4

40S ribosomal protein S18

Chain T4

40S ribosomal protein S19