J3_5VYC_058
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UGGA*UUAAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 5VYC|1|i2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VYC|1|i2|U|682
5VYC|1|i2|G|683
5VYC|1|i2|G|684
5VYC|1|i2|A|685
*
5VYC|1|i2|U|917
5VYC|1|i2|U|918
5VYC|1|i2|A|919
5VYC|1|i2|A|920
5VYC|1|i2|G|921
5VYC|1|i2|A|922
5VYC|1|i2|G|923
*
5VYC|1|i2|C|1019
5VYC|1|i2|A|1020
5VYC|1|i2|U|1021
5VYC|1|i2|U|1022
5VYC|1|i2|A|1023
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain H2
- 40S ribosomal protein S7
- Chain L2
- 40S ribosomal protein S11
- Chain N2
- 40S ribosomal protein S13
- Chain W2
- 40S ribosomal protein S15a
- Chain X2
- 40S ribosomal protein S23
- Chain b2
- 40S ribosomal protein S27
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