J3_5VYC_076

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

ACCAG*CCAGUAA*UGAUUAAGU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i4|A|1217
5VYC|1|i4|C|1218
5VYC|1|i4|C|1219
5VYC|1|i4|A|1220
5VYC|1|i4|G|1221
*
5VYC|1|i4|C|1645
5VYC|1|i4|C|1646
5VYC|1|i4|A|1647
5VYC|1|i4|G|1648
5VYC|1|i4|U|1649
5VYC|1|i4|A|1650
5VYC|1|i4|A|1651
*
5VYC|1|i4|U|1673
5VYC|1|i4|G|1674
5VYC|1|i4|A|1675
5VYC|1|i4|U|1676
5VYC|1|i4|U|1677
5VYC|1|i4|A|1678
5VYC|1|i4|A|1679
5VYC|1|i4|G|1680
5VYC|1|i4|U|1681

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain F4

40S ribosomal protein S5

Chain Q4

40S ribosomal protein S16

Chain c4

40S ribosomal protein S28