J3_5VYC_078
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUG*UUAGAUGUCCGGGGCUG
- Length
- 97 nucleotides
- Bulged bases
- 5VYC|1|i4|G|1256, 5VYC|1|i4|A|1258, 5VYC|1|i4|A|1260, 5VYC|1|i4|G|1274, 5VYC|1|i4|G|1285, 5VYC|1|i4|A|1287, 5VYC|1|i4|U|1300, 5VYC|1|i4|U|1306, 5VYC|1|i4|C|1317, 5VYC|1|i4|G|1507, 5VYC|1|i4|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VYC|1|i4|C|1237
5VYC|1|i4|U|1238
5VYC|1|i4|U|1239
5VYC|1|i4|A|1240
5VYC|1|i4|A|1241
5VYC|1|i4|U|1242
5VYC|1|i4|U|1243
5VYC|1|i4|U|1244
5VYC|1|i4|G|1245
*
5VYC|1|i4|C|1254
5VYC|1|i4|G|1255
5VYC|1|i4|G|1256
5VYC|1|i4|G|1257
5VYC|1|i4|A|1258
5VYC|1|i4|A|1259
5VYC|1|i4|A|1260
5VYC|1|i4|C|1261
5VYC|1|i4|C|1262
5VYC|1|i4|U|1263
5VYC|1|i4|C|1264
5VYC|1|i4|A|1265
5VYC|1|i4|C|1266
5VYC|1|i4|C|1267
5VYC|1|i4|C|1268
5VYC|1|i4|G|1269
5VYC|1|i4|G|1270
5VYC|1|i4|C|1271
5VYC|1|i4|C|1272
5VYC|1|i4|C|1273
5VYC|1|i4|G|1274
5VYC|1|i4|G|1275
5VYC|1|i4|A|1276
5VYC|1|i4|C|1277
5VYC|1|i4|A|1278
5VYC|1|i4|C|1279
5VYC|1|i4|G|1280
5VYC|1|i4|G|1281
5VYC|1|i4|A|1282
5VYC|1|i4|C|1283
5VYC|1|i4|A|1284
5VYC|1|i4|G|1285
5VYC|1|i4|G|1286
5VYC|1|i4|A|1287
5VYC|1|i4|U|1288
5VYC|1|i4|U|1289
5VYC|1|i4|G|1290
5VYC|1|i4|A|1291
5VYC|1|i4|C|1292
5VYC|1|i4|A|1293
5VYC|1|i4|G|1294
5VYC|1|i4|A|1295
5VYC|1|i4|U|1296
5VYC|1|i4|U|1297
5VYC|1|i4|G|1298
5VYC|1|i4|A|1299
5VYC|1|i4|U|1300
5VYC|1|i4|A|1301
5VYC|1|i4|G|1302
5VYC|1|i4|C|1303
5VYC|1|i4|U|1304
5VYC|1|i4|C|1305
5VYC|1|i4|U|1306
5VYC|1|i4|U|1307
5VYC|1|i4|U|1308
5VYC|1|i4|C|1309
5VYC|1|i4|U|1310
5VYC|1|i4|C|1311
5VYC|1|i4|G|1312
5VYC|1|i4|A|1313
5VYC|1|i4|U|1314
5VYC|1|i4|U|1315
5VYC|1|i4|C|1316
5VYC|1|i4|C|1317
5VYC|1|i4|G|1318
5VYC|1|i4|U|1319
5VYC|1|i4|G|1320
5VYC|1|i4|G|1321
5VYC|1|i4|G|1322
5VYC|1|i4|U|1323
5VYC|1|i4|G|1324
*
5VYC|1|i4|U|1504
5VYC|1|i4|U|1505
5VYC|1|i4|A|1506
5VYC|1|i4|G|1507
5VYC|1|i4|A|1508
5VYC|1|i4|U|1509
5VYC|1|i4|G|1510
5VYC|1|i4|U|1511
5VYC|1|i4|C|1512
5VYC|1|i4|C|1513
5VYC|1|i4|G|1514
5VYC|1|i4|G|1515
5VYC|1|i4|G|1516
5VYC|1|i4|G|1517
5VYC|1|i4|C|1518
5VYC|1|i4|U|1519
5VYC|1|i4|G|1520
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain K4
- 40S ribosomal protein S10
- Chain M4
- 40S ribosomal protein S12
- Chain P4
- 40S ribosomal protein S15
- Chain Q4
- 40S ribosomal protein S16
- Chain S4
- 40S ribosomal protein S18
- Chain U4
- 40S ribosomal protein S20
- Chain d4
- 40S ribosomal protein S29
- Chain f4
- Ribosomal protein S27a
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