J3_5VYC_080

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CACUGACU*AUUCGUGAUGG*CGAG

Length

23 nucleotides

Bulged bases

5VYC|1|i4|U|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i4|C|1532
5VYC|1|i4|A|1533
5VYC|1|i4|C|1534
5VYC|1|i4|U|1535
5VYC|1|i4|G|1536
5VYC|1|i4|A|1537
5VYC|1|i4|C|1538
5VYC|1|i4|U|1539
*
5VYC|1|i4|A|1594
5VYC|1|i4|U|1595
5VYC|1|i4|U|1596
5VYC|1|i4|C|1597
5VYC|1|i4|G|1598
5VYC|1|i4|U|1599
5VYC|1|i4|G|1600
5VYC|1|i4|A|1601
5VYC|1|i4|U|1602
5VYC|1|i4|G|1603
5VYC|1|i4|G|1604
*
5VYC|1|i4|C|1635
5VYC|1|i4|G|1636
5VYC|1|i4|A|1637
5VYC|1|i4|G|1638

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain F4

40S ribosomal protein S5

Chain Q4

40S ribosomal protein S16

Chain S4

40S ribosomal protein S18

Chain T4

40S ribosomal protein S19

Chain Z4

40S ribosomal protein S25