J3_5VYC_116

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VYC_116 not in the Motif Atlas

Geometric match to J3_8P9A_068

Geometric discrepancy: 0.1426

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5VYC|1|i4|A|40
5VYC|1|i4|G|41
*
5VYC|1|i4|C|481
5VYC|1|i4|G|482
5VYC|1|i4|C|483
5VYC|1|i4|A|484
5VYC|1|i4|A|485
5VYC|1|i4|A|486
5VYC|1|i4|U|487
*
5VYC|1|i4|A|512
5VYC|1|i4|G|513
5VYC|1|i4|U|514

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain J4

40S ribosomal protein S9

Chain X4

40S ribosomal protein S23