3D structure

PDB id
5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5W4K_022 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.1615
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

5W4K|1|1a|C|990
5W4K|1|1a|U|991
5W4K|1|1a|U|992
5W4K|1|1a|G|993
*
5W4K|1|1a|C|1045
5W4K|1|1a|A|1046
5W4K|1|1a|G|1047
*
5W4K|1|1a|C|1210
5W4K|1|1a|U|1211
5W4K|1|1a|U|1212
5W4K|1|1a|A|1213
5W4K|1|1a|C|1214
5W4K|1|1a|G|1215

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1n
30S ribosomal protein S14 type Z

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5623 s