J3_5W4K_031

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5W4K|1|2A|G|686, 5W4K|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5W4K_031 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0352

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5W4K|1|2A|C|683
5W4K|1|2A|G|684
5W4K|1|2A|A|685
5W4K|1|2A|G|686
5W4K|1|2A|C|687
5W4K|1|2A|U|688
5W4K|1|2A|A|689
*
5W4K|1|2A|U|773
5W4K|1|2A|A|774
5W4K|1|2A|G|775
*
5W4K|1|2A|C|791
5W4K|1|2A|G|792
5W4K|1|2A|A|793
5W4K|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2