J3_5W4K_035

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5W4K_035 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0518

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5W4K|1|2A|G|1344
5W4K|1|2A|C|1345
5W4K|1|2A|G|1346
5W4K|1|2A|G|1347
5W4K|1|2A|G|1348
5W4K|1|2A|A|1349
5W4K|1|2A|C|1350
*
5W4K|1|2A|G|1381
5W4K|1|2A|G|1382
5W4K|1|2A|C|1383
5W4K|1|2A|A|1384
5W4K|1|2A|G|1385
*
5W4K|1|2A|C|1402
5W4K|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23