3D structure

PDB id
5WE6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
5WE6|1|A|U|2833, 5WE6|1|A|A|2835, 5WE6|1|A|U|2884, 5WE6|1|A|G|2885
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5WE6_012 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1997
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

5WE6|1|A|G|2812
5WE6|1|A|A|2813
5WE6|1|A|A|2814
5WE6|1|A|C|2815
*
5WE6|1|A|G|2831
5WE6|1|A|U|2832
5WE6|1|A|U|2833
5WE6|1|A|G|2834
5WE6|1|A|A|2835
5WE6|1|A|U|2836
*
5WE6|1|A|A|2882
5WE6|1|A|A|2883
5WE6|1|A|U|2884
5WE6|1|A|G|2885
5WE6|1|A|A|2886
5WE6|1|A|A|2887
5WE6|1|A|C|2888

Current chains

Chain A
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22

Coloring options:


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