J3_5WIS_064

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5WIS|1|2A|C|34, 5WIS|1|2A|U|448, 5WIS|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WIS_064 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0791

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

5WIS|1|2A|C|32
5WIS|1|2A|U|33
5WIS|1|2A|C|34
5WIS|1|2A|G|35
*
5WIS|1|2A|C|445
5WIS|1|2A|G|446
5WIS|1|2A|A|447
5WIS|1|2A|U|448
5WIS|1|2A|A|449
5WIS|1|2A|G|450
5WIS|1|2A|C|451
5WIS|1|2A|G|452
5WIS|1|2A|C|453
5WIS|1|2A|A|454
5WIS|1|2A|C|455
5WIS|1|2A|C|456
5WIS|1|2A|A|457
5WIS|1|2A|G|458
5WIS|1|2A|U|459
5WIS|1|2A|A|460
5WIS|1|2A|C|461
*
5WIS|1|2A|G|468
5WIS|1|2A|G|469
5WIS|1|2A|A|470
5WIS|1|2A|A|471
5WIS|1|2A|A|472
5WIS|1|2A|G|473

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23