J3_5WIT_046

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WIT_046 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0923

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5WIT|1|2a|C|936
5WIT|1|2a|A|937
5WIT|1|2a|A|938
5WIT|1|2a|G|939
*
5WIT|1|2a|C|1344
5WIT|1|2a|U|1345
5WIT|1|2a|A|1346
5WIT|1|2a|G|1347
5WIT|1|2a|U|1348
5WIT|1|2a|A|1349
5WIT|1|2a|A|1350
*
5WIT|1|2a|U|1372
5WIT|1|2a|G|1373
5WIT|1|2a|A|1374
5WIT|1|2a|A|1375
5WIT|1|2a|U|1376
5WIT|1|2a|A|1377
5WIT|1|2a|C|1378
5WIT|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA