J3_5WIT_057

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5WIT|1|1A|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WIT_057 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0617

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5WIT|1|1A|C|321
5WIT|1|1A|G|322
5WIT|1|1A|A|323
5WIT|1|1A|A|324
5WIT|1|1A|G|325
*
5WIT|1|1A|C|340
5WIT|1|1A|G|341
5WIT|1|1A|C|342
5WIT|1|1A|C|343
5WIT|1|1A|A|344
5WIT|1|1A|G|345
5WIT|1|1A|A|346
5WIT|1|1A|G|347
5WIT|1|1A|A|348
5WIT|1|1A|G|349
*
5WIT|1|1A|C|361
5WIT|1|1A|G|362
5WIT|1|1A|U|363
5WIT|1|1A|A|364
5WIT|1|1A|G|365

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24