J3_5WLC_004
3D structure
- PDB id
- 5WLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the small subunit processome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5WLC_004 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.2911
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5WLC|1|L1|U|1168
5WLC|1|L1|G|1169
5WLC|1|L1|G|1170
5WLC|1|L1|A|1171
*
5WLC|1|L1|U|1468
5WLC|1|L1|A|1469
5WLC|1|L1|C|1470
*
5WLC|1|L1|G|1574
5WLC|1|L1|G|1575
5WLC|1|L1|A|1576
5WLC|1|L1|A|1577
Current chains
- Chain L1
- 18S pre-rRNA
Nearby chains
- Chain L5
- rpS5_uS7
- Chain SK
- Emg1
- Chain SM
- Imp4
- Chain ST
- Nop14
Coloring options: