J3_5WLC_009
3D structure
- PDB id
- 5WLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the small subunit processome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5WLC_009 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.2576
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5WLC|1|L1|C|1161
5WLC|1|L1|C|1162
5WLC|1|L1|A|1163
5WLC|1|L1|G|1164
*
5WLC|1|L1|C|1581
5WLC|1|L1|U|1582
5WLC|1|L1|A|1583
5WLC|1|L1|G|1584
5WLC|1|L1|U|1585
5WLC|1|L1|A|1586
5WLC|1|L1|A|1587
*
5WLC|1|L1|U|1609
5WLC|1|L1|G|1610
5WLC|1|L1|A|1611
5WLC|1|L1|U|1612
5WLC|1|L1|U|1613
5WLC|1|L1|A|1614
5WLC|1|L1|C|1615
5WLC|1|L1|G|1616
Current chains
- Chain L1
- 18S pre-rRNA
Nearby chains
- Chain L5
- rpS5_uS7
- Chain LC
- rpS16_uS9
- Chain LG
- rpS28_eS28
- Chain LO
- Utp1
- Chain SM
- Imp4
Coloring options: