J3_5WNQ_007
3D structure
- PDB id
- 5WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCGA
- Length
- 27 nucleotides
- Bulged bases
- 5WNQ|1|A|A|975, 5WNQ|1|A|G|976, 5WNQ|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5WNQ_007 not in the Motif Atlas
- Geometric match to J3_6CZR_062
- Geometric discrepancy: 0.154
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5WNQ|1|A|U|955
5WNQ|1|A|U|956
5WNQ|1|A|U|957
5WNQ|1|A|A|958
5WNQ|1|A|A|959
5WNQ|1|A|U|960
5WNQ|1|A|U|961
5WNQ|1|A|C|962
*
5WNQ|1|A|G|973
5WNQ|1|A|A|974
5WNQ|1|A|A|975
5WNQ|1|A|G|976
5WNQ|1|A|A|977
5WNQ|1|A|A|978
5WNQ|1|A|C|979
5WNQ|1|A|C|980
5WNQ|1|A|U|981
5WNQ|1|A|U|982
5WNQ|1|A|A|983
5WNQ|1|A|C|984
5WNQ|1|A|C|985
*
5WNQ|1|A|G|1220
5WNQ|1|A|G|1221
5WNQ|1|A|G|1222
5WNQ|1|A|C|1223
5WNQ|1|A|G|1224
5WNQ|1|A|A|1225
Current chains
- Chain A
- 16S Ribosomal RNA rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain S
- 30S ribosomal protein S19
Coloring options: