3D structure

PDB id
5WNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUACC*GGGCGA
Length
27 nucleotides
Bulged bases
5WNQ|1|A|A|975, 5WNQ|1|A|G|976, 5WNQ|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5WNQ_007 not in the Motif Atlas
Geometric match to J3_6CZR_062
Geometric discrepancy: 0.154
The information below is about J3_6CZR_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_59791.1
Basepair signature
cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

5WNQ|1|A|U|955
5WNQ|1|A|U|956
5WNQ|1|A|U|957
5WNQ|1|A|A|958
5WNQ|1|A|A|959
5WNQ|1|A|U|960
5WNQ|1|A|U|961
5WNQ|1|A|C|962
*
5WNQ|1|A|G|973
5WNQ|1|A|A|974
5WNQ|1|A|A|975
5WNQ|1|A|G|976
5WNQ|1|A|A|977
5WNQ|1|A|A|978
5WNQ|1|A|C|979
5WNQ|1|A|C|980
5WNQ|1|A|U|981
5WNQ|1|A|U|982
5WNQ|1|A|A|983
5WNQ|1|A|C|984
5WNQ|1|A|C|985
*
5WNQ|1|A|G|1220
5WNQ|1|A|G|1221
5WNQ|1|A|G|1222
5WNQ|1|A|C|1223
5WNQ|1|A|G|1224
5WNQ|1|A|A|1225

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14 type Z
Chain S
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.099 s