J3_5WNU_008

3D structure

PDB id

5WNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WNU_008 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1089

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5WNU|1|A|C|990
5WNU|1|A|U|991
5WNU|1|A|U|992
5WNU|1|A|G|993
*
5WNU|1|A|C|1045
5WNU|1|A|A|1046
5WNU|1|A|G|1047
*
5WNU|1|A|C|1210
5WNU|1|A|U|1211
5WNU|1|A|U|1212
5WNU|1|A|A|1213
5WNU|1|A|C|1214
5WNU|1|A|G|1215

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z