J3_5WYJ_003
3D structure
- PDB id
- 5WYJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.7 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5WYJ|1|SA|C|934
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5WYJ_003 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2936
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5WYJ|1|SA|A|881
5WYJ|1|SA|U|882
5WYJ|1|SA|C|883
5WYJ|1|SA|A|884
*
5WYJ|1|SA|U|928
5WYJ|1|SA|A|929
5WYJ|1|SA|A|930
5WYJ|1|SA|C|931
5WYJ|1|SA|U|932
5WYJ|1|SA|A|933
5WYJ|1|SA|C|934
5WYJ|1|SA|U|935
5WYJ|1|SA|G|936
*
5WYJ|1|SA|C|943
5WYJ|1|SA|A|944
5WYJ|1|SA|U|945
5WYJ|1|SA|U|946
5WYJ|1|SA|U|947
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain K1
- KRR1 small subunit processome component
- Chain SC
- 40S ribosomal protein S1-A
- Chain SO
- 40S ribosomal protein S13
- Chain SP
- 40S ribosomal protein S14-A
- Chain UC
- Unassigned helices
Coloring options: