J3_5WYJ_006

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CCAGAG*CUUGACC*GGUG

Length

17 nucleotides

Bulged bases

5WYJ|1|3A|C|107, 5WYJ|1|3A|U|261

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYJ|1|3A|C|106
5WYJ|1|3A|C|107
5WYJ|1|3A|A|108
5WYJ|1|3A|G|109
5WYJ|1|3A|A|110
5WYJ|1|3A|G|111
*
5WYJ|1|3A|C|259
5WYJ|1|3A|U|260
5WYJ|1|3A|U|261
5WYJ|1|3A|G|262
5WYJ|1|3A|A|263
5WYJ|1|3A|C|264
5WYJ|1|3A|C|265
*
5WYJ|1|3A|G|306
5WYJ|1|3A|G|307
5WYJ|1|3A|U|308
5WYJ|1|3A|G|309

Current chains

Chain 3A

U3 RNA

Nearby chains

Chain 3C

rRNA 2'-O-methyltransferase fibrillarin

Chain 3D

Nucleolar protein 56

Chain 3G

13 kDa ribonucleoprotein-associated protein