J3_5WYJ_010

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

5WYJ|1|SA|A|1217, 5WYJ|1|SA|G|1445, 5WYJ|1|SA|C|1447

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYJ|1|SA|C|1215
5WYJ|1|SA|C|1216
5WYJ|1|SA|A|1217
5WYJ|1|SA|G|1218
5WYJ|1|SA|A|1219
5WYJ|1|SA|C|1220
*
5WYJ|1|SA|G|1263
5WYJ|1|SA|G|1264
5WYJ|1|SA|G|1265
5WYJ|1|SA|U|1266
5WYJ|1|SA|G|1267
*
5WYJ|1|SA|U|1442
5WYJ|1|SA|U|1443
5WYJ|1|SA|A|1444
5WYJ|1|SA|G|1445
5WYJ|1|SA|A|1446
5WYJ|1|SA|C|1447
5WYJ|1|SA|G|1448

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E1

Ribosomal RNA small subunit methyltransferase NEP1

Chain E3

Essential nuclear protein 1