J3_5WYK_005

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCAGAG*CUUGACC*GGUG

Length

17 nucleotides

Bulged bases

5WYK|1|3A|U|261, 5WYK|1|3A|G|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|3A|C|106
5WYK|1|3A|C|107
5WYK|1|3A|A|108
5WYK|1|3A|G|109
5WYK|1|3A|A|110
5WYK|1|3A|G|111
*
5WYK|1|3A|C|259
5WYK|1|3A|U|260
5WYK|1|3A|U|261
5WYK|1|3A|G|262
5WYK|1|3A|A|263
5WYK|1|3A|C|264
5WYK|1|3A|C|265
*
5WYK|1|3A|G|306
5WYK|1|3A|G|307
5WYK|1|3A|U|308
5WYK|1|3A|G|309

Current chains

Chain 3A

U3 RNA

Nearby chains

Chain 3C

rRNA 2'-O-methyltransferase fibrillarin

Chain 3D

Nucleolar protein 56

Chain 3G

13 kDa ribonucleoprotein-associated protein