J3_5WYK_006
3D structure
- PDB id
- 5WYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 5WYK|1|SA|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5WYK_006 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.2493
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5WYK|1|SA|U|633
5WYK|1|SA|G|634
5WYK|1|SA|A|635
*
5WYK|1|SA|U|861
5WYK|1|SA|A|862
5WYK|1|SA|A|863
5WYK|1|SA|U|864
5WYK|1|SA|A|865
5WYK|1|SA|G|866
*
5WYK|1|SA|C|962
5WYK|1|SA|A|963
5WYK|1|SA|U|964
5WYK|1|SA|U|965
5WYK|1|SA|A|966
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SI
- 40S ribosomal protein S7-A
- Chain SO
- 40S ribosomal protein S13
- Chain SX
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S27-A
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