J3_5XYM_010

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYM_010 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1041

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5XYM|1|A|U|2317
5XYM|1|A|U|2318
5XYM|1|A|G|2319
*
5XYM|1|A|C|2422
5XYM|1|A|U|2423
5XYM|1|A|A|2424
5XYM|1|A|A|2425
5XYM|1|A|C|2426
*
5XYM|1|A|G|2450
5XYM|1|A|G|2451
5XYM|1|A|A|2452
5XYM|1|A|C|2453
5XYM|1|A|A|2454
5XYM|1|A|G|2455

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28