J3_5XYM_012

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5XYM|1|A|A|2745, 5XYM|1|A|U|2746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYM_012 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0879

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5XYM|1|A|C|2744
5XYM|1|A|A|2745
5XYM|1|A|U|2746
5XYM|1|A|C|2747
*
5XYM|1|A|G|2772
5XYM|1|A|U|2773
5XYM|1|A|U|2774
*
5XYM|1|A|A|2788
5XYM|1|A|U|2789
5XYM|1|A|U|2790
5XYM|1|A|A|2791
5XYM|1|A|A|2792
5XYM|1|A|A|2793
5XYM|1|A|G|2794

Current chains

Chain A

23S RNA

Nearby chains

Chain K

50S ribosomal protein L14