J3_5XYM_016
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 5XYM|1|A|U|34, 5XYM|1|A|U|539, 5XYM|1|A|U|547
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5XYM_016 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.2358
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5XYM|1|A|C|32
5XYM|1|A|U|33
5XYM|1|A|U|34
5XYM|1|A|G|35
*
5XYM|1|A|C|536
5XYM|1|A|G|537
5XYM|1|A|A|538
5XYM|1|A|U|539
5XYM|1|A|A|540
5XYM|1|A|G|541
5XYM|1|A|C|542
5XYM|1|A|G|543
5XYM|1|A|G|544
5XYM|1|A|A|545
5XYM|1|A|U|546
5XYM|1|A|U|547
5XYM|1|A|A|548
5XYM|1|A|G|549
5XYM|1|A|U|550
5XYM|1|A|A|551
5XYM|1|A|C|552
*
5XYM|1|A|G|559
5XYM|1|A|G|560
5XYM|1|A|A|561
5XYM|1|A|A|562
5XYM|1|A|U|563
5XYM|1|A|G|564
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
Coloring options: