J3_5XYU_005

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYU_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1183

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5XYU|1|A|C|918
5XYU|1|A|A|919
5XYU|1|A|A|920
5XYU|1|A|G|921
*
5XYU|1|A|C|1326
5XYU|1|A|U|1327
5XYU|1|A|A|1328
5XYU|1|A|G|1329
5XYU|1|A|U|1330
5XYU|1|A|A|1331
5XYU|1|A|A|1332
*
5XYU|1|A|U|1355
5XYU|1|A|G|1356
5XYU|1|A|A|1357
5XYU|1|A|A|1358
5XYU|1|A|U|1359
5XYU|1|A|A|1360
5XYU|1|A|C|1361
5XYU|1|A|G|1362

Current chains

Chain A

16S RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9