J3_5Z3G_003

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5Z3G_003 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.5075

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5Z3G|1|A|C|3298
5Z3G|1|A|A|3299
5Z3G|1|A|U|3300
*
5Z3G|1|A|A|3314
5Z3G|1|A|G|3315
5Z3G|1|A|A|3316
5Z3G|1|A|U|3317
5Z3G|1|A|G|3318
*
5Z3G|1|A|C|3388
5Z3G|1|A|U|3389
5Z3G|1|A|G|3390

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain T

60S ribosomal protein L17-A