J3_5Z3G_006

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AGACAUG*UGGG*CAUAAU

Length

17 nucleotides

Bulged bases

5Z3G|1|A|C|439, 5Z3G|1|A|U|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5Z3G|1|A|A|436
5Z3G|1|A|G|437
5Z3G|1|A|A|438
5Z3G|1|A|C|439
5Z3G|1|A|A|440
5Z3G|1|A|U|441
5Z3G|1|A|G|442
*
5Z3G|1|A|U|492
5Z3G|1|A|G|493
5Z3G|1|A|G|494
5Z3G|1|A|G|495
*
5Z3G|1|A|C|618
5Z3G|1|A|A|619
5Z3G|1|A|U|620
5Z3G|1|A|A|621
5Z3G|1|A|A|622
5Z3G|1|A|U|623

Current chains

Chain A

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L6-A

Chain O

Ribosome production factor 1

Chain Z

Protein MAK16

Chain i

60S ribosomal protein L32

Chain j

60S ribosomal protein L33-A