J3_5ZEB_019
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UG*CACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 5ZEB|1|a|U|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEB_019 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1937
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5ZEB|1|a|U|652
5ZEB|1|a|G|653
*
5ZEB|1|a|C|697
5ZEB|1|a|A|698
5ZEB|1|a|C|699
5ZEB|1|a|C|700
5ZEB|1|a|G|701
5ZEB|1|a|G|702
5ZEB|1|a|U|703
5ZEB|1|a|G|704
5ZEB|1|a|G|705
*
5ZEB|1|a|C|712
5ZEB|1|a|G|713
5ZEB|1|a|G|714
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain o
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S18 2
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