J3_5ZEB_024

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

5ZEB|1|a|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEB_024 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.185

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5ZEB|1|a|U|972
5ZEB|1|a|U|973
5ZEB|1|a|U|974
5ZEB|1|a|G|975
*
5ZEB|1|a|C|1025
5ZEB|1|a|A|1026
5ZEB|1|a|G|1027
*
5ZEB|1|a|C|1191
5ZEB|1|a|U|1192
5ZEB|1|a|U|1193
5ZEB|1|a|A|1194
5ZEB|1|a|U|1195
5ZEB|1|a|G|1196

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z