J3_5ZEB_031
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 5ZEB|1|A|U|31, 5ZEB|1|A|U|536, 5ZEB|1|A|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEB_031 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2154
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
5ZEB|1|A|C|29
5ZEB|1|A|U|30
5ZEB|1|A|U|31
5ZEB|1|A|G|32
*
5ZEB|1|A|C|533
5ZEB|1|A|G|534
5ZEB|1|A|A|535
5ZEB|1|A|U|536
5ZEB|1|A|A|537
5ZEB|1|A|G|538
5ZEB|1|A|C|539
5ZEB|1|A|G|540
5ZEB|1|A|G|541
5ZEB|1|A|A|542
5ZEB|1|A|U|543
5ZEB|1|A|U|544
5ZEB|1|A|A|545
5ZEB|1|A|G|546
5ZEB|1|A|U|547
5ZEB|1|A|A|548
5ZEB|1|A|C|549
*
5ZEB|1|A|G|556
5ZEB|1|A|G|557
5ZEB|1|A|A|558
5ZEB|1|A|A|559
5ZEB|1|A|U|560
5ZEB|1|A|G|561
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L23
Coloring options: