J3_5ZEP_001

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEP_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1074

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5ZEP|1|A|G|27
5ZEP|1|A|C|28
*
5ZEP|1|A|G|562
5ZEP|1|A|U|563
5ZEP|1|A|G|564
5ZEP|1|A|A|565
5ZEP|1|A|A|566
5ZEP|1|A|A|567
5ZEP|1|A|A|568
5ZEP|1|A|G|569
*
5ZEP|1|A|C|596
5ZEP|1|A|C|597

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24