J3_5ZEP_007
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGA*UUGAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_007 not in the Motif Atlas
- Homologous match to J3_5J7L_040
- Geometric discrepancy: 0.2386
- The information below is about J3_5J7L_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5ZEP|1|A|G|1173
5ZEP|1|A|G|1174
5ZEP|1|A|A|1175
*
5ZEP|1|A|U|1199
5ZEP|1|A|U|1200
5ZEP|1|A|G|1201
5ZEP|1|A|A|1202
5ZEP|1|A|A|1203
5ZEP|1|A|A|1204
5ZEP|1|A|G|1205
*
5ZEP|1|A|C|1220
5ZEP|1|A|A|1221
5ZEP|1|A|C|1222
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain I
- 50S ribosomal protein L10
- Chain J
- 50S ribosomal protein L11
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