J3_5ZEP_010

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

5ZEP|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEP_010 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1337

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5ZEP|1|A|U|1459
5ZEP|1|A|C|1460
5ZEP|1|A|G|1461
5ZEP|1|A|G|1462
5ZEP|1|A|G|1463
5ZEP|1|A|A|1464
5ZEP|1|A|C|1465
*
5ZEP|1|A|G|1496
5ZEP|1|A|A|1497
5ZEP|1|A|C|1498
5ZEP|1|A|A|1499
5ZEP|1|A|A|1500
*
5ZEP|1|A|U|1517
5ZEP|1|A|A|1518

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain U

50S ribosomal protein L23